Education
Work Experience
Publications
- 2009
- Benjamin Good. Strategies
for amassing, characterizing, and applying third-party metadata in
bioinformatics. Ph.D. dissertation in Bioinformatics. Vancouver,
British Columbia: University of British Columbia; 2009.
- Good, B.M., Tennis, J.T., Wilkinson M.D. (2009). Social tagging in
the life sciences: characterizing a new metadata resource for
bioinformatics. BMC Bioinformatics 2009, 10:313 (25 September
2009).
- Good, B.M., Lu, P., Kawas, E.K., Wilkinson M.D. Open semantic
annotation: an experiment with BioMoby Web services. Proceedings of the
2nd Canadian Semantic Web Working Symposium, May 24, 2009, Kelowna,
British Columbia Canada. To appear as a chapter in "Canadian Semantic
Web 2". An extended version is available as Chapter 7 of my dissertation.
- Tennis, J.T., Good, B.M. (2009). Term based
comparison metrics for controlled and uncontrolled indexing
languages. Information Research, 14(1) paper 395.
- 2008
- Belleau, F., Tourigny, N., Good, B.M., & Morissette, J. (2008).
Bio2RDF: A
Semantic Web Atlas of post genomic knowledge about Human and Mouse.
Proceedings of the 2008 Conference on Data Integration in the Life
Sciences, Evry, France.
- Good, B.M., & Tennis, J.T. (2008). Evidence of
Term-Structure Differences among Folksonomies and Controlled Indexing
Languages. Poster presented at the Annual Meeting of the American
Society for Information Science and Technology, Columbus, OH, USA.
- Daniel P Davis, Jeremy Peay, Benjamin Good, Michael J Sise, Frank
Kennedy, A Brent Eastman, Thomas Velky, and David B Hoyt (2008). Air medical response
to traumatic brain injury: a computer learning algorithm analysis.
The Journal of trauma 64 (4), 889-97
- Richard Bruskiewich, Martin Senger, Guy Davenport, et al., (2008)
“The
Generation Challenge Programme Platform: Semantic Standards and
Workbench for Crop Science,” International Journal of Plant
Genomics, vol. 2008, Article ID 369601, 6 pages, 2008.
doi:10.1155/2008/369601
- 2007
- Low AJ, Dong W, Chan D, Sing T, Swanstrom R, Jensen M, Pillai S,
Good B, Harrigan PR (2007) Current
V3 genotyping algorithms are inadequate for predicting X4 co-receptor
usage in clinical isolates. published in AIDS
September 2007
- Good BM and Wilkinson MD (2007) Ontology
engineering using volunteer labor published in Proceedings of the World
Wide Web Conference May 2007
- Kuo BYL, Hentrich T, Good BM and Wilkinson MD (2007) Tag Clouds for
Summarizing Web Search Results published in Proceedings of the World
Wide Web Conference May 2007
- 2006
- Song YC, Kawas EK,Good BM, Wilkinson MD, Tebbutt SJ (2006) DataBiNS:
Data Mining Tool for Biological Pathways and Non-Synonymous SNPs
published in Bioinformatics
January 2007
- Johannesson H, Kasuga T, Schaller RA, Good B, Gardner MJ,
Townsend JP, Cole GT, Taylor JW (2006) Phase-specific
gene expression underlying morphological adaptations of the dimorphic
human pathogenic fungus, Coccidioides posadasii. published in Fungal
Genetics and Biology August 2006
- Good BM Kawas E, Kuo B and Wilkinson MD (2006) iHOPerator:
user-scripting a personalized bioinformatics Web, starting with the
iHOP website published in BMC
Bioinformatics December 2006
- Good BM and Wilkinson MD (2006) The
Life Science Semantic Web is Full of Creeps! Article accepted for
publication in Briefings in
Bioinformatics in July of 2006
- Pillai SK, Kosakovsky SL, Liu Y, Good BM, Strain MC, Ellis RJ,
Letendre S, Smith DM, Gunthard HF, Grant I, Marcotte TD, McCutchan JA,
Richman DD, Wong JK (2006) Genetic
attributes of cerebrospinal fluid-derived HIV-1 env .
Article accepted for publication in Brain in 2006
- Good B,Tranfield EM,Tan PC, Shehata M, Singhera GK, Gosselink
J, Okon EB, Wilkinson (2006) Fast, Cheap, and
Out of Control: A Zero Curation Model for Ontology Development. Pacific Symposium on Biocomputing
2006.
- 2005
- Naviaux RK, Good B,McPherson JD,Steffen DL,Markusic D,Ransom
B,Corbeil J. (2005) Sand DNA—a
genetic library of life at the water’s edge Printed in MEPS Vol. 301
(2005) on October 11.
- Pillai S, Good B,Kosakovsky Pond S, Wong JK, Strain MC,
Richman DD, Smith DM. (2005) Semen-specific
genetic characteristics of HIV-1 env. J Virol. 2005
Feb;79(3):1734-42. PMID: 15650198
- Strain MC, Letendre S, Pillai S, Russell T, Ignacio CC, Gunthard HF,
Good B, Smith DM, Wolinsky SM, Furtado M, Marquie-Beck J,
Durelle J, Grant I, Richman DD, Marcotte T, McCutchan JA, Ellis RJ,
Wong JK. (2005) Genetic
composition of HIV-1 in CSF and plasma without treatment and during
failing combination antiretroviral therapy.J Virol. 2005
Feb;79(3):1772-88. PMID: 15650202
- 1999-2004
- Leigh
Brown AJ, Frost SD, Good B, Daar ES, Simon V, Markowitz M,
Collier AC, Connick E, Conway B, Margolick JB, Routy JP, Corbeil J,
Hellmann NS, Richman DD, Little SJ. (2004) Genetic basis of
hypersusceptibility to protease inhibitors and low replicative capacity
of human immunodeficiency virus type 1 strains in primary infection. J
Virol. 2004 Mar;78(5):2242-6. PMID: 14963120.
- Pillai
S, Good B, Richman D, Corbeil J. (2003) A new perspective on
V3 phenotype prediction. AIDS Res Hum Retroviruses. 2003
Feb;19(2):145-9. Erratum in: AIDS Res Hum Retroviruses. 2003
Apr;19(4):347. PMID: 1264327
- Good B, Peay J, Pillai S, Corbeil
J: (2001) Class Prediction Based on Gene Expression: Applying
Neural Networks via a Genetic Algorithm Wrapper. p122-130 in 2001
Genetic and Evolutionary Computation Conference Late Breaking Papers.
San Francisco, California, July 9-11, 2001.
- Starr B, Chaudhri VK,Katz B, Good B, Thomere J (1999) HIKE
(HPKB Integrated Knowledge Environment) - A Query Interface and
Integrated Knowledge Environment for HPKB. 927-928 AAAI-99 Intelligent
Systems Demos. Proceedings of the Sixteenth National Conference on
Artificial Intelligence and Eleventh Conference on Innovative
Applications of Artificial Intelligence, July 18-22, 1999, Orlando,
Florida, USA. AAAI Press / The MIT Press, 1999, ISBN 0-262-51106-1